RnoEX6011944 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257437298-257440628:+
Coord C1 exon
chr2:257437298-257437458
Coord A exon
chr2:257440117-257440268
Coord C2 exon
chr2:257440549-257440628
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTTTTTTTACAGGGC
3' ss Score
12.26
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGGAGAAACAATAAAAAGCATAAGCCAGCAGTCCGGTGCAAGAATAGAACTTCAGAGAAACCCTCCACCTAATGCAGATCCCAATATGAAGTTATTTACAATTCGGGGCACTCCACAGCAAATAGACTATGCTCGACAACTCATAGAAGAGAAGATTGGG
Seq A exon
GGCCCAGTAAATCCTTTAGGGCCACCAGTACCCCATGGACCTCATGGGGTTCCAGGTCCTCATGGGCCTCCTGGACCTCCAGGGCCTGGAACTCCAATGGGGCCATACAACCCTGCACCTTATAATCCAGGACCTCCTGGCCCAGCTCCTCA
Seq C2 exon
TGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCATATCCACATTGGCAGCAGCAGGCTCCTCCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAACAATAAAAAGCATAAGCC
R:
GCCTGCTGCTGCCAATGT
Band lengths:
226-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]