MmuEX6074960 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3185761-3190280:+
Coord C1 exon
chr17:3185761-3185874
Coord A exon
chr17:3187589-3187745
Coord C2 exon
chr17:3190147-3190280
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCCTTTCCCAATAGATT
3' ss Score
10.95
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGATTCCACCCAGGGGCTGTGCATATGTCTGCATGGTTCATCGACAAGATTCATTTCGGGCTCTTCAGAAACTGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAG
Seq A exon
ATTGCCTGGGCTTTGAACAAAGGTGTAAAGACAGAATACAAACAGTTCTGGGATGTGGATCTTGGCGTCACATATATACCCTGGGAAAAAGTGAAAGTAGATGACTTGGATGGCTTTGCAGAGGGCGGCATGATTGATCAGGAGACTGTAAATGCTG
Seq C2 exon
AATGGGAAACTGTGAAAGCCTCAGAACCTGTTAAAGAGCCAGTGCAGACTGCACAGAGTCCAGCTCCAGTTGAGAAGGAGTCAGTGGTCACCACACAGGCAGAGGTTTTCCCTCCTCCTGTCGCCATGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'23-28,'23-27,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.635
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(55.2=100)
A:
PF120393=DUF3525=PU(42.7=60.4)
C2:
PF120393=DUF3525=PD(56.0=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTCCACCCAGGGGCTG
R:
GCGACAGGAGGAGGGAAAAC
Band lengths:
238-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: