DreEX0064314 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48857014-48857681:+
Coord C1 exon
chr17:48857014-48857127
Coord A exon
chr17:48857219-48857375
Coord C2 exon
chr17:48857551-48857681
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTGTATTACTTACAGATT
3' ss Score
8.67
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGATTCCTCCCAGAGGCTGCGCTTACATCTGTATGGTCCATCGTCAGGACGCATATCGGGCTCTTCAAAAGCTGAGCACCGGCTCTTACAAAATTGGTTCAAAGGTCATCAAG
Seq A exon
ATTGCTTGGGCTCTGAATAAAGGAGTCAAACAGGAGTACAAGCAGTTCTGGGATGTGGACCTCGGGGTCACTTATATCCCGTGGGAGAAGGTGAAACTGGATGACCTGGATGACTTTGCTGAGGGAGGCATGATTGACCAGGAGACGGTCAACAACG
Seq C2 exon
ATTGGGAATCACAAAGGAATACGGAGACAGCCAAAGAGACTCCGAGTCAGCCAGTTAAAGCTGAAGCAAGTACAGCCAGCAGCACAGCCAGTGAGGCCTTCACACAGCCGGTCACTATGATGCCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'15-19,'15-18,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.245 C2=0.977
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(55.2=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGAGGCTGCGCTTA
R:
CATGGGCATCATAGTGACCGG
Band lengths:
235-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]