RnoEX0078266 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44083329-44112218:+
Coord C1 exon
chr1:44083329-44083442
Coord A exon
chr1:44084609-44084765
Coord C2 exon
chr1:44112085-44112218
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCATTCCCGGTAGATT
3' ss Score
9.69
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGATTCCACCCAGGGGCTGTGCATATGTCTGTATGGTTCATCGACAAGATTCATTTCGGGCTCTCCAGAAACTGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAG
Seq A exon
ATTGCCTGGGCTTTGAACAAAGGTGTAAAGACAGAATACAAACAGTTCTGGGACGTGGATCTTGGAGTCACATATATACCCTGGGAAAAAGTTAAAGTAGATGACTTGGATGGCTTTGCAGAGGGAGGCATGATTGATCAGGAAACTGTAAATGCTG
Seq C2 exon
AATGGGAAACTGTGAAAACCTCAGAACCCGTTAAAGAGACTGTCCAGACGACACAGAGTCCAGCTGCAGTTGAGAAGGAGACAGTGGTCACAACGCAGTCAGAGGTTTTCCCTCCTCCTGTCACCATGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.756
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(55.2=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTCCACCCAGGGGCTG
R:
TGGTGACAGGAGGAGGGAAAA
Band lengths:
240-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]