GgaEX1050985 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52250081-52252122:+
Coord C1 exon
chr3:52250081-52250194
Coord A exon
chr3:52250734-52250890
Coord C2 exon
chr3:52251992-52252122
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTTGGGGTTTTATTTTCAGATT
3' ss Score
9.7
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATGATTCCCCCAAGAGGTTGTGCGTATGTCTGCATGGTTCATAGACAAGATGCATATCGTGCTCTTCAGAAGCTTAGTTCTGGGTCCTACAAAATCGGATCTAAAATTATTAAG
Seq A exon
ATTGCCTGGGCTTTAAATAAAGGTGTAAAAACAGAGTATAAGCAATTCTGGGATGTGGATCTGGGAGTTTCATATATTCCTTGGGAGAAGGTAAAATTGGATGATTTGGAGGGCTTTGCTGAGGGTGGCATGATTGACCAGGAGACAGTAAATACAG
Seq C2 exon
AATGGGAAACAGCGAGGAGCTCAGAACCTGCTAAAGAAAATATTCAAACTACGCAGAGTACTGCAGTTGATAAGAGCACAGTGATTACAACGCAGACGGAAGCTTACACACAACCGGTCACTATGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'16-24,'16-23,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.727
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(55.2=100)
A:
PF120393=DUF3525=PU(41.0=60.4)
C2:
PF120393=DUF3525=FE(55.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCCCCAAGAGGTTGTGC
R:
TGTAGCATAGTGACCGGTTGTG
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]