BtaEX6050095 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92860163-92864079:+
Coord C1 exon
chr9:92860163-92860276
Coord A exon
chr9:92861922-92862078
Coord C2 exon
chr9:92863946-92864079
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCTCTTATAGATT
3' ss Score
12.29
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGATTCCTCCCAGAGGCTGTGCGTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTTAGTTCCGGCTCGTATAAAATTGGATCCAAGGTCATTAAG
Seq A exon
ATTGCTTGGGCTTTAAACAAAGGTGTGAAAACAGAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACGTATATACCATGGGAGAAAGTTAAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAAACTGTAAATACTG
Seq C2 exon
AGTGGGAAACGGTGAAAAGCTCAGAACCTGTTAAAGAGACGGTCCAGACAACTCAGAGCCCACCTCCAGCTGAAAAGGAGACAGTGGTCACAACCCAGGCAGAGGTTTTCCCTCCACCTGTTGCTATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'21-20,'21-18,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.189 C2=0.733
Domain overlap (PFAM):
C1:
PF064956=Transformer=PD(7.1=26.3),PF0007617=RRM_1=FE(55.2=100)
A:
PF120393=DUF3525=PU(42.7=60.4)
C2:
PF120393=DUF3525=PD(56.0=93.3)
Main Skipping Isoform:
ENSBTAT00000045257fB6142
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCAGAGGCTGTGCG
R:
CTGTAACATAGCAACAGGTGGAGG
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]