MmuEX6075613 @ mm9
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24454059-24458092:-
Coord C1 exon
chr17:24457919-24458092
Coord A exon
chr17:24455101-24455273
Coord C2 exon
chr17:24454059-24454184
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTCTACCTTCTTTGGAACAGGCA
3' ss Score
6.7
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCCACGTAGGAACTGTGATAGGTGGCACTGTCTTCTTCTTCACTTATCTTCCCTACATGTACATCACTTTCAGCTACCACCAGAGGACTTACACCCAGAAGATACTCTCTTGCCTCTTCTCCAATGTTGCCATGGCAACGGGAGTCCGGTTCATATCTCTGTTTGAAGCAGAAG
Seq A exon
GCACAGGCATCCAATGGAGGAACATAGGCAGTGTCTGGGGAGACTTCAGCTTTGCTCAGGTGCTGGGGATGCTCTTGCTGGACTCCTTTTTGTACTGTCTGATAGCCTTTTTGGTGGAGTCTCTCTTCCCAAGAAAGTTTGGAATACCTAAGTCTTGGTACATCTTTGCCAAG
Seq C2 exon
AAGCCCGTTCCAGAGATACCGCCACTTTTGAATATTGGGGATCCTGAGAAACCGTCAAAAGGGAATTTCATGCAGGATGAGCCAACAAATCAGATGAACACAATTGAAATCCAACATCTGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.1=100)
A:
PF126982=ABC2_membrane_3=PD(8.3=63.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGTGATAGGTGGCACTG
R:
TGTTGGCTCATCCTGCATGAA
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: