MmuEX6075613 @ mm10
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24317114-24321147:-
Coord C1 exon
chr17:24320974-24321147
Coord A exon
chr17:24318156-24318328
Coord C2 exon
chr17:24317114-24317239
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTCTACCTTCTTTGGAACAGGCA
3' ss Score
6.7
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCCACGTAGGAACTGTGATAGGTGGCACTGTCTTCTTCTTCACTTATCTTCCCTACATGTACATCACTTTCAGCTACCACCAGAGGACTTACACCCAGAAGATACTCTCTTGCCTCTTCTCCAATGTTGCCATGGCAACGGGAGTCCGGTTCATATCTCTGTTTGAAGCAGAAG
Seq A exon
GCACAGGCATCCAATGGAGGAACATAGGCAGTGTCTGGGGAGACTTCAGCTTTGCTCAGGTGCTGGGGATGCTCTTGCTGGACTCCTTTTTGTACTGTCTGATAGCCTTTTTGGTGGAGTCTCTCTTCCCAAGAAAGTTTGGAATACCTAAGTCTTGGTACATCTTTGCCAAG
Seq C2 exon
AAGCCCGTTCCAGAGATACCGCCACTTTTGAATATTGGGGATCCTGAGAAACCGTCAAAAGGGAATTTCATGCAGGATGAGCCAACAAATCAGATGAACACAATTGAAATCCAACATCTGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-'12-22,'12-20,13-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.1=100)
A:
PF126982=ABC2_membrane_3=PD(16.6=63.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGTGATAGGTGGCACTG
R:
TGTTGGCTCATCCTGCATGAA
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types