BtaEX6108029 @ bosTau6
Exon Skipping
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1875485-1884607:+
Coord C1 exon
chr25:1875485-1875658
Coord A exon
chr25:1883332-1883504
Coord C2 exon
chr25:1884464-1884607
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACTGTTCTCCCTTTTGACAGGCA
3' ss Score
9.78
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTCATGTTGCCACTGCCTCAGGAGGCATCATCTTCTTCTTCACCTACCTCCCTTATCTCTACATCGCGTTCACATACAGCCAAAGGAGCTCCTTCCAAAAGATTGCCTTTTGCCTCCTCTCCAACGTTGCCATGGCACTGGGAGTCCGATTAATCTCCACATTTGAAGCAAGAG
Seq A exon
GCACAGGCGTCCAGTGGAGGAACATGGGCCATATAGGAGGAGAGTTTAACTTCACTCAGGTGCTGCTGATGCTGCTGCTGGACTCTGTCTTATATGGCTTGGTGGCCTGGTATGTGGAGGCCATCTTCCCAGGAGAGTATGGTATACCCAAGCCCTGGTACTTCTTTCTCACG
Seq C2 exon
CCCTCCTACTGGTGGAGAGAACCTACATCCCTTAGGAATCCTGTGGAAGACTTAGAGGATCCTCAGCAAGCTCTGGGAAACAAGTTCATTCAGGATGAGCCTACCAATTTGATAAAAGGAATTGAAATCCAGCATCTATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643-'12-9,'12-8,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.1=100)
A:
PF126982=ABC2_membrane_3=PD(8.4=63.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGTTGCCACTGCCTCAG
R:
TTCCCAGAGCTTGCTGAGGAT
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]