RnoEX6046378 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13683642-13687784:-
Coord C1 exon
chr10:13687611-13687784
Coord A exon
chr10:13684709-13684881
Coord C2 exon
chr10:13683642-13683785
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTCCTTTGGAACAGGCA
3' ss Score
7.56
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCCACGTAGGAACTGTGATAGGCGGCATCGTCTTCTTCTTCACCTACCTTCCCTACATGTACATCACTTTCAGTTACCACCAGCGGACTTACTCCCAGAAGATACTCTCTTGCCTCTTCTCCAATGTTGCCATGGCAATGGGAGTCCGGTTCATCTCTCTGTTTGAAGCGGAAG
Seq A exon
GCACAGGCATCCAATGGAGGAACATGGGCAGCGTCTGGGGCGACTTCAGCTTCACTCAGGTGCTGGTGATGCTCTTGCTGGACTCCTTCTTGTACTGCCTGGTAGCCTTTTTGGTGGAGTCTCTCTTCCCAAGAAAGATCGGAATGCCTAAGTCTTGGTACATCTTTGCCAAG
Seq C2 exon
TGTCCCCTCTGGCGCAAGAAGTCCTTTCCAGTAATACCGCCACTGTTGGTTATTGGGGATCCTGAGAAAACTTCTAAAGGGGACTTCCTGCAGGACGAGCCAGCAGGTCACATAAACGCCATCGAGATCCAGCATCTGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.1=100)
A:
PF126982=ABC2_membrane_3=PD(8.3=63.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTACCACCAGCGGACTT
R:
CAGATGCTGGATCTCGATGGC
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]