MmuEX6075648 @ mm9
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24503031-24511448:+
Coord C1 exon
chr17:24503031-24503158
Coord A exon
chr17:24503713-24503878
Coord C2 exon
chr17:24511189-24511448
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGTCAATTCTGTTTCTACAGGTG
3' ss Score
10.1
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
TGCACGGCTTCTCCTCTGAGAAGGACTTCGAGGACTACATTCGCTATGACAACCACTCCTCCAGCGTGCTGGCAGCTGTGGTATTTGAGCACAGCTTCAACCACAGCCAGGACCCCCTGCCGCTGGCG
Seq A exon
GTGAAATACCACCTGCGCTTCAGTTACACACGAAGAAATTACATGTGGACCCAAACAGGAAATATTTTCCTAAAAGAGACTGAAGGCTGGCATACCACTTCACTTTTTCCACTTTTTCCAAGCCCCGGACCGCGGGAACCTTCATCACCTGATGGCGGTGAACCTG
Seq C2 exon
GATACATTCGGGAAGGCTTCCTGGCCATGCAACATGCTGTAGACAAAGCCATCATGCGTTACCATGCCAACACCTCTGCACAGCAGCTGTTCCAGAAGCTCATGGTGATCACCAAAAGGTTCCCGTTCCCACCATACATCTCAGATCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCTCATGCTGAGTTTCACCTACACCTCCCTCACCATCATCCGGGCTGTGGTGCAGGAGAAGGAGAAAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.232 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.4=100)
A:
PF126982=ABC2_membrane_3=FE(12.2=100)
C2:
PF126982=ABC2_membrane_3=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTGTGGTATTTGAGCA
R:
CAGCATGAGCAGCAGAGGAAG
Band lengths:
252-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: