GgaEX1005381 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13584385-13586134:-
Coord C1 exon
chr14:13586007-13586134
Coord A exon
chr14:13585721-13585886
Coord C2 exon
chr14:13584385-13584644
Length
166 bp
Sequences
Splice sites
3' ss Seq
CATGGGTGCTCTCCTGACAGGTG
3' ss Score
11.06
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
Exon sequences
Seq C1 exon
CCCAGGGCTTCGCCTCGGAGCGGGATTTCGAGGACTACGTCCGACGGGACAACCGCTCAGGCAGCGTGCTGGCTGCTGTCGTCTTCAAACACCACTTCAGCCACAGCACAGACCCGCTGCCCCTCCAG
Seq A exon
GTGGACTATGAGCTGCGCTTCAAGTACAGCCCCAGGAACGCGCCACGGAGTGAGCAGACGGGGCTGAACCCCAACCTGGACCGGGACTGGCACACCAGCTACCTCTTCCCACTCTTCCAGCTGCCCGGGCCCCGCGAGGCCAAGTTTGTGGATGGAGGAACGCCGG
Seq C2 exon
GTTACATCCGGGAGGGCTTCCTGGCAGTGCAGCATGCTGTGGACCGGGCCATCATGCAGTATCACACCAACAGCTCTGCCACCAGCCTGCTGGAGAACATCACCGTGGTGGTGCAGCGCTTCCCCTACCCGTCCTACGTCAACGACCTCTTTGTCCTCGCCATCCAGAACCAGCTCCCACTGCTGCTCATGCTCAGCTTCACCTACACCTCGCTCAACATCGTCCGCGCCGTCGTGCACGAGAAGGAGAAGAAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.196 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.4=100)
A:
PF126982=ABC2_membrane_3=FE(12.3=100)
C2:
PF126982=ABC2_membrane_3=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACCACTTCAGCCACAGC
R:
AGGTGTAGGTGAAGCTGAGCA
Band lengths:
252-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]