RnoEX6046403 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13737926-13747119:+
Coord C1 exon
chr10:13737926-13738053
Coord A exon
chr10:13739077-13739242
Coord C2 exon
chr10:13746860-13747119
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGTCAACTCTGTTTCCACAGGTG
3' ss Score
11.07
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
TGCACGGCTTTTCCTCTGAGAAGGACTTCGAGGACTACGTTCGCTATGACAACCACTCCTCCAACGTGCTGGCAGCTGTGGTATTTGAGCACACCTTCAACCACAGCAAGGACCCCCTGCCATTGGCG
Seq A exon
GTGAGATACCACCTACGCTTCAGTTACACGCGAAGAAATTACATGTGGACCCAAACAGGAAATCTTTTCCTCAAAGAGACTGAAGGCTGGCACACCGCTTCTCTTTTCCCGCTTTTCCCAAGCCCAGGACCAAGGGAACCTTCATCACCTGATGGCGGTGAACCGG
Seq C2 exon
GGTACATCCGTGAGGGCTTCCTGGCAGTGCAACACGCTGTAGACAAAGCCATCATGCATTACCATGCCAACGCCTCTGCACACCAGCTGTTCCAGAAGCTCACGGTGATCACCAAAAGGTTCCCGTTCCCGCCATACATCTCAGACCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCTCATGCTGAGCTTCACCTACACCTCCCTCACCATCATCCGGGCTGTGGTGCAGGAGAAAGAGAAAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'8-9,'8-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.4=100)
A:
PF126982=ABC2_membrane_3=FE(12.2=100)
C2:
PF126982=ABC2_membrane_3=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTTCAACCACAGCAAGG
R:
ATGGTGAGGGAGGTGTAGGTG
Band lengths:
258-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]