DreEX6015432 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12458614-12479353:+
Coord C1 exon
chr3:12458614-12458741
Coord A exon
chr3:12472228-12472393
Coord C2 exon
chr3:12479094-12479353
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTGGGTGTCGTGTGTGGCAGGTC
3' ss Score
8.31
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTCGTGGCTTTGAAACGGAGGAGCAGTTTGAGGAGTTCGTGAAAACTGATCCAGAGTCAGGCAAGATTTTGGCAGCCATTGTGTTTGAACATCCATTCAGTCACGATGATGAGCCGCTTCCTCTGCAG
Seq A exon
GTCAGCTATCATCTGCGCTTCACGTACAGCCCCAGAAATGCTCCAGCCCGAGAGAAGTCCGAGCTCAACCCTAACAATGATATGGACTGGCACACGCTCAGCCTGTTCCCGCTGTTCCAGATGCCCGGACCCAGAGAACAACACGACCCTCACGGGGGAACGCCAG
Seq C2 exon
GTTATTACCGTGAGGGTTTCCTTCAGGTCCAGTACGCGGTGGACAGAGCGATCATGATGGCCTACAACAGAAGCGCGGCCATGGCTCTCTTCGACCAAACACAGGTGCTGCTGTCCCGCTTCCCTTACCCAGCGTTCATCTACGACGTCTTCATCCTGGCCATCCAGAACCAGCTGCCCCTGCTGCTTGTGCTCAGCTTCACCTACACGGCACTGAACATCGTCCGCGCCGTCGTGCAGGAGAAGGAGAGGAAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.357 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.5=100)
A:
PF126982=ABC2_membrane_3=FE(12.4=100)
C2:
PF126982=ABC2_membrane_3=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGAGCCGCTTCCTCTG
R:
CGATGTTCAGTGCCGTGTAGG
Band lengths:
246-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]