MmuEX6083754 @ mm10
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5571057-5574333:+
Coord C1 exon
chr11:5571057-5571171
Coord A exon
chr11:5571286-5571459
Coord C2 exon
chr11:5574227-5574333
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTTGGGACAATCCCCGCAGGCC
3' ss Score
6.15
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GACTGCTCTTCACTACGCCTGTGCTCACGGCCAGTCAGAAATGGTGAGCCTCTTGCTGTGGTATGACTGCAACATCGAAGCCCGAGACCGAGAGGAAAGCACAGCTCTGATCAAG
Seq A exon
GCCACACAGCGCCAGCACGAGATCTGTGTGAAGATTCTTCTAGAGAACGGCGCCGACTCCAACGCCGTCGATATCCATCAGAACACCTCCCTCCACTACACGGTCTACAACAAGGACACCACCATAGCCGCCAAGCTTCTGGCATTCAATGCAGACACCGAAGTTAAGACAAAG
Seq C2 exon
AACGGCTACACGCCGCTTATACTTGCGGTGCTAGAAAACAAACAGGAGATGGTGGAACTCTTACTGCAGGCTGCAGCCAACATAAACGCCCTGGATAACTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.9=63.8)
C2:
PF127962=Ank_2=PD(44.3=86.1),PF0002325=Ank=PU(6.1=5.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTTCACTACGCCTGTG
R:
CTTGCAGTTATCCAGGGCGTT
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types