RnoEX0004522 @ rn6
Exon Skipping
Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85816231-85820069:+
Coord C1 exon
chr14:85816231-85816345
Coord A exon
chr14:85816667-85816840
Coord C2 exon
chr14:85819963-85820069
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTTGGGACAATCCCCACAGGCC
3' ss Score
5.91
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
GACCGCTCTGCACTATGCCTGTGCTCACGGCCAGTCAGAAATGGTGAGCCTCTTGCTGTGGTACGACTGCAACATCGAAGCCCGAGACCGAGAGGAAAGCACAGCTCTGATCAAG
Seq A exon
GCCACACAGCGCCAGCATGAGATCTGTGTGAAGATCCTTCTGGAAAACGGCGCGGACCCAAACGCCGTCGATGCTTATCATATCACGGCCCTCCACTACGCGGTCTACAACAACGACACGGCCATAGCCGCCAAGCTTCTGTCGTTCAATGCAAACACTGAAATTAAGACAAAG
Seq C2 exon
AATGGCTACACGCCACTCATCCTCGCAGTGCTGGAAAACAAACAGGAGATGGTGGAACTCTTGCTGCGGGCTGCGGCCAACATAAACGCCCTGGATAACTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(51.4=62.1)
C2:
PF127962=Ank_2=PD(45.7=88.9),PF127962=Ank_2=PU(15.5=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTGCACTATGCCTGTG
R:
CTCTTGCAGTTATCCAGGGCG
Band lengths:
219-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]