MmuEX6089023 @ mm9
Exon Skipping
Gene
ENSMUSG00000001507 | Itga3
Description
integrin alpha 3 [Source:MGI Symbol;Acc:MGI:96602]
Coordinates
chr11:94927077-94930153:-
Coord C1 exon
chr11:94930026-94930153
Coord A exon
chr11:94929539-94929618
Coord C2 exon
chr11:94927077-94927326
Length
80 bp
Sequences
Splice sites
3' ss Seq
GATCTCTCCCATTCTTACAGGTG
3' ss Score
10.68
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCTTCTGGCCGGGGCTCCCCGGGACCTCGCTGTGGGTGATGACTATACCAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAAAA
Seq A exon
GTGACCCTGACCATCACATTATTGAGGATATGTGGCTTGGAGTGACTGTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTG
Seq C2 exon
GTCTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTGGCAATGACCTACAGCTCGACCCCGGCGATGACTGGCAGACATACCACAACGAGATGTGTAACAGCAACACTGACTACTTGCAGACCGGCATGTGCCAGCTGGGCACCAGCGGCGGCTTCACCCAGAACACCGTATACTTCGGTGCCCCTGGTGCCTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001507-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTACCTGTGTCCCCTCA
R:
GTCGAGCTGTAGGTCATTGCC
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: