BtaEX6087963 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019498 | ITGA3
Description
Integrin alpha-3 Integrin alpha-3 heavy chain Integrin alpha-3 light chain [Source:UniProtKB/Swiss-Prot;Acc:F1MMS9]
Coordinates
chr19:37220999-37223486:-
Coord C1 exon
chr19:37223359-37223486
Coord A exon
chr19:37222957-37223033
Coord C2 exon
chr19:37220999-37221248
Length
77 bp
Sequences
Splice sites
3' ss Seq
GAGCCCTCTCATGCCCACAGGTA
3' ss Score
8.85
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCTCCTGGCTGGCGCCCCCCGGGACCTCGCTGTGCCTGATGGCTATACCAACCGGACTGGTGCTGTGTACCTGTGCCCACTCACTGCCCACAAGAATGACTGTGAGCGGATGGACATCAAGGAGAAAA
Seq A exon
GTAACCCTAACCACATCATTGAGGACATGTGGCTCGGCGTGACTGTGGCCAGCCAGGGTCCTGCAGGCAGAGTCCTG
Seq C2 exon
GTCTGTGCCCACCGCTACACCCAGGTGCTGTGGTCCGGGTCAGAGGACCAGCGGCGCATGGTGGGCAAGTGCTATGTGAGAGGCAACGACCTGGAGCTGGACGCCAGGGATGACTGGCAGACCTACCACAACGAGATGTGCAACAGCAACACTGACTACCTGGAGACAGGCATGTGCCAGCTGGGCACCAGCGGCGGCTTCACCCAAAACACCGTGTACTTTGGCGCTCCTGGTGCCTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019498-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGATGGACATCAAGGAGA
R:
TGCTGTTGCACATCTCGTTGT
Band lengths:
172-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]