RnoEX6049285 @ rn6
Exon Skipping
Gene
ENSRNOG00000004276 | Itga3
Description
integrin subunit alpha 3 [Source:RGD Symbol;Acc:1310333]
Coordinates
chr10:82877234-82879900:-
Coord C1 exon
chr10:82879773-82879900
Coord A exon
chr10:82879320-82879399
Coord C2 exon
chr10:82877234-82877483
Length
80 bp
Sequences
Splice sites
3' ss Seq
GATCCCACCCATTCTTGCAGGTG
3' ss Score
8.51
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCTTCTGGCCGGTGCACCCCGAGACCTCGCAGTGGATGATGACTACACCAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACTGCCCTCAAGAACGATTGTGAACGCATGGACATTTCAGAGAAGA
Seq A exon
GTGACCCTGACCATCACATTATTGAGGACATGTGGCTTGGAGTGACTGTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTG
Seq C2 exon
GTCTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTGGGCTGGAAGACCAGCGGCGCATGGTGGGCAAGTGCTACGTGCGTGGCAACGACCTACAGCTCGACCCTGGCGATGATTGGCAGACATACCACAACGAGATGTGTAACAGCAACACTGACTACTTGCAGACTGGCATGTGCCAGCTGGGCACCAGTGGCGGCTTCACCCAGAACACTGTATACTTCGGCGCCCCTGGTGCCTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004276-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATTGTGAACGCATGGACA
R:
CTCGTTGTGGTATGTCTGCCA
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]