HsaEX6023464 @ hg38
Exon Skipping
Gene
ENSG00000005884 | ITGA3
Description
integrin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6139]
Coordinates
chr17:50064077-50068305:+
Coord C1 exon
chr17:50064077-50064204
Coord A exon
chr17:50064528-50064607
Coord C2 exon
chr17:50068056-50068305
Length
80 bp
Sequences
Splice sites
3' ss Seq
GATCCTTCCGGTGCCCACAGATG
3' ss Score
9.86
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCTCCTGGCTGGTGCCCCCCGGGAGCTCGCTGTGCCCGATGGCTACACCAACCGGACTGGTGCTGTGTACCTGTGCCCACTCACTGCCCACAAGGATGACTGTGAGCGGATGAACATCACAGTGAAAA
Seq A exon
ATGACCCTGGCCATCACATTATTGAGGACATGTGGCTTGGAGTGACTGTGGCCAGCCAGGGCCCTGCAGGCAGAGTTCTG
Seq C2 exon
GTCTGTGCCCACCGCTACACCCAGGTGCTGTGGTCAGGGTCAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTACGTGCGAGGCAATGACCTAGAGCTGGACTCCAGTGATGACTGGCAGACCTACCACAACGAGATGTGCAATAGCAACACAGACTACCTGGAGACGGGCATGTGCCAGCTGGGCACCAGCGGTGGCTTCACCCAGAACACTGTGTACTTCGGCGCCCCCGGTGCCTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005884-'11-15,'11-12,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGACTGTGAGCGGATGA
R:
TTGTGGTAGGTCTGCCAGTCA
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains