MmuEX6090409 @ mm10
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:105126425-105129075:+
Coord C1 exon
chr11:105126425-105126606
Coord A exon
chr11:105126776-105126867
Coord C2 exon
chr11:105128741-105129075
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGCCCGTTTGGTTTTCACAGGGA
3' ss Score
8.92
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
ACTTCCGGAAGGGGCGTGGCCCACAGGAAGTCCTCGCCTTCGGGAAGAGAAGGCGTTTCCGTCTCCGGTGTCATGGCGGCCTCCTTCCCTGAAGGCGTGCCGGAGACCGAGGACGGGAAGAGACCGCAGTTCGGGCACCGGTTCCTGAGCGACCCGGCGCGCGTCTTCCATCACAATGCCTG
Seq A exon
GGACAACGTGAAGTGGTCCGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGCTCCCCGCTGGTGTGCCCGGAGAAGCAAG
Seq C2 exon
TTGATTATGAAGTCAATGCCCATAAATACTGGGATGACTTCTACAGAATCCATGAAAATGGGTTTTTCAAGGATAGACACTGGCTTTTTACTGAGTTCCCTGAATTGGCACCTAGCCACAGTCACCTGACGGGTGTACCCTTGGAGAAGCAGAGGAGTGACGTCTGTGAGGACGGACCTGGCTTGACAGCAGAACAGCACAAGTGTTCTTGTGCCAGCCCTGGATGTGAGACTCAGGTGCCTCCCTTGGAAGAGCCAGTGACTCAGAAGCTCGGTCACCTAGAAATTAGTGGTGAGGAATTTCCTGGCTCCTCTGCCACCTACCGAATACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.562 C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(15.0=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTTCCATCACAATGCCT
R:
CTCCTCTGCTTCTCCAAGGGT
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types