MmuEX6090409 @ mm9
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:104987739-104990389:+
Coord C1 exon
chr11:104987739-104987920
Coord A exon
chr11:104988090-104988181
Coord C2 exon
chr11:104990055-104990389
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGCCCGTTTGGTTTTCACAGGGA
3' ss Score
8.92
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
ACTTCCGGAAGGGGCGTGGCCCACAGGAAGTCCTCGCCTTCGGGAAGAGAAGGCGTTTCCGTCTCCGGTGTCATGGCGGCCTCCTTCCCTGAAGGCGTGCCGGAGACCGAGGACGGGAAGAGACCGCAGTTCGGGCACCGGTTCCTGAGCGACCCGGCGCGCGTCTTCCATCACAATGCCTG
Seq A exon
GGACAACGTGAAGTGGTCCGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGCTCCCCGCTGGTGTGCCCGGAGAAGCAAG
Seq C2 exon
TTGATTATGAAGTCAATGCCCATAAATACTGGGATGACTTCTACAGAATCCATGAAAATGGGTTTTTCAAGGATAGACACTGGCTTTTTACTGAGTTCCCTGAATTGGCACCTAGCCACAGTCACCTGACGGGTGTACCCTTGGAGAAGCAGAGGAGTGACGTCTGTGAGGACGGACCTGGCTTGACAGCAGAACAGCACAAGTGTTCTTGTGCCAGCCCTGGATGTGAGACTCAGGTGCCTCCCTTGGAAGAGCCAGTGACTCAGAAGCTCGGTCACCTAGAAATTAGTGGTGAGGAATTTCCTGGCTCCTCTGCCACCTACCGAATACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.604 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(15.0=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTTCCATCACAATGCCT
R:
CTCCTCTGCTTCTCCAAGGGT
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: