RnoEX0054023 @ rn6
Exon Skipping
Gene
ENSRNOG00000006131 | Mettl2b
Description
methyltransferase like 2B [Source:RGD Symbol;Acc:1310240]
Coordinates
chr10:93354003-93356586:+
Coord C1 exon
chr10:93354003-93354126
Coord A exon
chr10:93354298-93354389
Coord C2 exon
chr10:93356237-93356586
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGCCCGTTTGGTTTTCACAGGGA
3' ss Score
8.92
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
CCGTCTCCGGTGTCATGGCGGCCTCCTTGTCTGAAGGCGTGCCGGAGACTGAGGACAGGAAAAGACCGCAGTTCGGGAACCGGTTCTTGAGCGACCCGGCGCGCGTCTTCCACCACAATGCCTG
Seq A exon
GGACAACGTGAAGTGGTCAGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGTTCCCAGCTGGTGTGCCCGGAGAAGCAAG
Seq C2 exon
CTGATTATGAAGTCAATGCCCATAAATACTGGGATGACTTCTACAAAGTTCACGAAAATGGGTTTTTCAAGGACAGACACTGGCTTTTTACTGAGTTCCCTGAACTGGCACCTAGCCACGATCACCTAGTGAATTTGCACTTGGAGAAACAGAAGAATGAAGTCTCCAAACCTAGAAGCAGTGAGGATGGACCTGGCTTGGCAGCAGAACAACACAAGCGTCCTTGTACCAGCCATGGATGTGAAACTCGGGTGCCTCCCGTGGAAGAGCCGGTGACTCAGAAGCTCACCCACCTGGAAATTTGTGCTGACGACTTTCCTGGCTCCTCTGCTACCTACCGAATACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006131-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=0.750 C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(15.4=24.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAAAGACCGCAGTTCG
R:
AGGTGCCAGTTCAGGGAACTC
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]