DreEX0046126 @ danRer10
Exon Skipping
Gene
ENSDARG00000008105 | mettl2a
Description
methyltransferase like 2A [Source:ZFIN;Acc:ZDB-GENE-050417-462]
Coordinates
chr3:19515579-19524819:+
Coord C1 exon
chr3:19515579-19515781
Coord A exon
chr3:19523727-19523815
Coord C2 exon
chr3:19524578-19524819
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCAGTCTAATTGTGTTTCAGGGA
3' ss Score
8.91
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GACGTCATGCAGAACAGCCATGTGCATCCGGTTCGCGTGTCCATCATGGCTGCTCCTGCTGTTGCTGCTGATTCTCCAGTCATAGAAAATATGCCAGAAACTGCCGGTGGGGCCACGGAAAATTCAGCTGAGGCCCAGAAACGACCGCAGTTTGGCACTCGCTTCCTCACAGACCCGCGACAGGTGTTTCAGCACAACGCGTG
Seq A exon
GGATAATGTGGAGTGGTCAGCAGAACAGGAGGAGGCTGCCTTGAAAAAAGTGCAAGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAG
Seq C2 exon
AGGAGTTTGACGACAGGGCCAATGAATACTGGAATGACTTTTACACCATTCACGAGAACCGCTTCTTCAAGGATCGTCACTGGCTCTTTACAGAGTTCCCCGAGCTTGCACCTCAGCAAAAGCATTTACGGGGTGCTGAGGAGAAGGAAAGCCTGGAACACATGTTAAATGGTGAAGATGTTTCCTCGAATCACACACATGATGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008105-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=0.935 C2=0.407
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(21.3=53.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCCAGAAACTGCCGGTG
R:
GAAGCGGTTCTCGTGAATGGT
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]