GgaEX0000345 @ galGal4
Exon Skipping
Gene
ENSGALG00000000396 | METTL2A
Description
Methyltransferase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHP8]
Coordinates
chr27:2332100-2337391:+
Coord C1 exon
chr27:2332100-2332215
Coord A exon
chr27:2333761-2333852
Coord C2 exon
chr27:2337039-2337391
Length
92 bp
Sequences
Splice sites
3' ss Seq
CACTTTAATTTTTACAACAGGGA
3' ss Score
6.44
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCTTCCGGCGGCGCCCAGCCAGTCATGGCGGCGCCCAGCGAGGCGCCGGAGCGGCGGCGGCCGTTCGGGAGGCGCTTCCTCACCGACCCCACCCGCCTCTTCCAGCATAACGCCTG
Seq A exon
GGATAATGTGGAATGGTCAGAAGAGCAGGAAGCCACTGCCAAGAGTAAAGTTCAAGAGAACAGCTCACAGCTATTGCCACAAGATAAACAAG
Seq C2 exon
AAGAATATGAGGTGAATGCTAAGAGATACTGGGATGACTTTTATAAAATCCATGAAAATGGCTTCTTCAAGGACAGGCACTGGCTGTTCACTGAATTTCCTGAGCTGGCACCAAATAGGAACCCAAGTCAAAATGAGGATTCTCTGTGTGAATTTAGCTGCAAAGAGGTATCCAAAAATGAAGGGCTGGGAAGCTGTGAAAATGGACATTGCACGTTAGAAAACAGAGCAGAGAATCAGCTGAACCTGCTAAAAAGCAGTCCTAGGTTCTGTACAGAAGAGCTGGCTCCACAGAAGCTGAAACAAAGTTATGAAGATTACCCAGGATCCTCTGCTTCTTACCGTATATTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=0.781 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(16.8=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCACCGACCCCACC
R:
TGGGTTCCTATTTGGTGCCAG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]