BtaEX6089439 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47512361-47514816:+
Coord C1 exon
chr19:47512361-47512479
Coord A exon
chr19:47512685-47512776
Coord C2 exon
chr19:47514461-47514816
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGCCCATTTAATTTTCCCAGGGA
3' ss Score
7.57
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
TCCGGTGTCATGGACTGCTCCTTCCCTGAAGGCGATCCTGCGGCCGTCTGCGGGAAGAGGCAGCAGTTCGGGAGCCGGTTTCTGAGCGACCCCGCTCGCGTCTTTCACCACAATGCCTG
Seq A exon
GGACAACGTGGAGTGGTCGGAGGAGCAGGCCGCGGAGGCAGAAAGGAAAGTCCAGGAGAACAGCACTCAGCGGGTGTGCCAGGAGAAGCAAG
Seq C2 exon
CTGATTATGAGATTAATGCCAACAAATATTGGAACAACTTCTACAAAATCCATGAAAACGGGTTTTTCAAGGATAGACATTGGCTTTTTACTGAATTCCCAGAGCTGGCACCTAGCCAAAATCACTTGAAGAATTTGCTCTCAGAGAATAAGAGGAGTGAAGTATATGAATACTATAGAAGCGGTGAGGATGGACCTGATTTAACAATAGAAGAACAGCACCGTTGTTCTTCTGTTAGCCTTGGAGATAAGACACAGCCACCTCTTACGGAAGAGAGTGTAACTCAGAAGCTCCATCACCTGGAAATCTGTGCTAATGAGTTTCCTGGATCCTCCGCCACCTACCGAATACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458-'0-2,'0-0,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.750 C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(15.4=24.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACTGCTCCTTCCCTGAA
R:
AACCCGTTTTCATGGATTTTGT
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]