MmuEX6090796 @ mm9
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109813867-109816515:-
Coord C1 exon
chr11:109816349-109816515
Coord A exon
chr11:109814812-109814945
Coord C2 exon
chr11:109813867-109814004
Length
134 bp
Sequences
Splice sites
3' ss Seq
CATGTTGAATGACATCTCAGAGG
3' ss Score
1.51
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GCTCTTGATACTGGTAGTCGGCATCTGTCCTTTTCTTTTTGAAAATATCTCAACGAAAATACGTCAAAGCTCTTACACTTGGGAACTTTCCCCACACGATTACTTCCTTGCTCCGGGACAACAGCCCCAGGGCATGCTCACTCAGTTATTGATCATTAATAAGACAG
Seq A exon
AGGCAAGCATTGACGACTTTATCCATTCTGTGGAACGCCAGAACATAGCTTTGGAAGTCGATGCTTCTGGAACCAGAGATGGTACAGATGACCCATCCTACAATGGAGCCCTTATAGTGTCTGGCAATGAGAAG
Seq C2 exon
AACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGACATCCTGAGCAACGGGCTACTTGGAATGGTTAAACCGTCAGCCCGCATCCAAACCGACAGAAGCACATATCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(10.0=62.2)
C2:
PF126982=ABC2_membrane_3=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAGTCGGCATCTGTCCTT
R:
ACCATTCCAAGTAGCCCGTTG
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: