MmuEX6090813 @ mm9
Exon Skipping
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:109932734-109935442:-
Coord C1 exon
chr11:109935351-109935442
Coord A exon
chr11:109933142-109933200
Coord C2 exon
chr11:109932734-109932844
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGCTCTCTTTCTCAGAAT
3' ss Score
10.85
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CGGACTGCCCTTGACAATGAAACAGACTATGAGTTTTCTGATGACTCTTTTGAACCTGTGTCTATGGAATTCCATGGGAAGGAAGCCATCAG
Seq A exon
AATCAGAAATCTTACAAAAGACTACATACAAAAGTCTAAGCGCACAGAAGCTTTGAAAG
Seq C2 exon
ATCTGACACTGGATGTATATAAAGGCCAGATTACTGCGATCCTTGGTCACAGTGGAGCTGGGAAATCAACACTGTTAAATGTCCTGAGTGGGTTGTGTGTTCCCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.5)
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACTGCCCTTGACAATGAA
R:
AGGATCGCAGTAATCTGGCCT
Band lengths:
135-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: