RnoEX6050300 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98455204-98457171:-
Coord C1 exon
chr10:98457003-98457171
Coord A exon
chr10:98455526-98455584
Coord C2 exon
chr10:98455204-98455314
Length
59 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTCTTGTTTGCAGGAT
3' ss Score
10.87
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTAAGTACGGACATCAGCGTTCTCCGTTGTTTTTCCTGAAGTCATCTTACTGGTTTCAACGCAGAGGAGCTGATCATGTGGTCCTTGAGAATGAAATAGACTCTGCTCCTTCACTCAATGACTCATTGGAACCCGTGTCTCCAGAATTCCAGGGGAAAGAAGCTATCAG
Seq A exon
GATCAAAAATCTTAGAAAGGAATATACAGGAAAGCATGGAAAAGTAGAAGCCTTAAGAG
Seq C2 exon
GTCTGGGATTTGATATATACGAAGGCCAGATCACTGCCCTTCTTGGTCATAGTGGAGCTGGGAAAACCACCCTGATAAACACACTCAGTGGACTGTCACCTCCTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.5)
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGTGTCTCCAGAATTCCA
R:
GGAGGTGACAGTCCACTGAGT
Band lengths:
142-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]