MmuEX6090840 @ mm10
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110146908-110148909:-
Coord C1 exon
chr11:110148741-110148909
Coord A exon
chr11:110147215-110147273
Coord C2 exon
chr11:110146908-110147018
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTTTTCTACAGGAT
3' ss Score
12.9
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTAAGTACGGACATCAACGGTCTCCATTGTTTTTCCTGAAGTCGTCTTACTGGTTTAAACGCAGAGGAGCTAGTCACGTGGTCCTTGAGAATGAAATAGATTCGGATCCCTCGCTGAATGACTCACTGGAACCAGTGTCTCCAGAATTCCAGGGGAAAGAAGCCATCAG
Seq A exon
GATCAAAAATCTTAAAAAAGAATATTCTGGAAAGCATGGGAAAGTAGAAGCCTTGAGAG
Seq C2 exon
GTCTGGGGTTTGACATATATGAAGGCCAGATCACTGCCCTCCTTGGTCACAGTGGAGCTGGGAAAACCACCCTGATAAATACACTCAGTGGACTGTCACCCCCTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.5)
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCGGATCCCTCGCTGAA
R:
GGTTTTCCCAGCTCCACTGTG
Band lengths:
140-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types