GgaEX6016336 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8220455-8221870:-
Coord C1 exon
chr18:8221714-8221870
Coord A exon
chr18:8221388-8221446
Coord C2 exon
chr18:8220455-8220565
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTACCTTTCCTTTAGACT
3' ss Score
9.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCAAATACGGCGTGCCGTACCCCCCGCTGTTCTTTCTGAGGCCGTCGTATTGGCTGCAGTGGGGCAGCAAGCGCAGCACCCAGCCTGACCCCATCCCTGTCCCTGGCTGTGACACCGAGCCCATGCCTGAGGGCTTCGAGGGGAAGGAGGCCATCAG
Seq A exon
ACTATACAACATTAGAAAAACATACAAGAGGAAGGGCAAGATAACCGAAGCTTTAAGAG
Seq C2 exon
GTTTGTCCTTCAACATTTATGAAGGTCAGATCACTGCATTACTTGGTCTCAGCGGGTCTGGAAAAACTGCCCTCTTGAATGTGCTCAGTGGATTTTCCAAGCCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGTCCCTGGCTGTG
R:
GAGGGCAGTTTTTCCAGACCC
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]