BtaEX0001725 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62113674-62116833:+
Coord C1 exon
chr19:62113674-62113842
Coord A exon
chr19:62115920-62115981
Coord C2 exon
chr19:62116723-62116833
Length
62 bp
Sequences
Splice sites
3' ss Seq
ACGTCTTCCTCTCTTTTCAGAAT
3' ss Score
12.64
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTGAATATGGACGTCAGCAGCCTCCCTGGTTTTTCCTTAAATCCTCTTCTTGGTTCCAACGCCGAAGGGCTGATCGTGCGGCCCTCGAGAATGACATCGATCCAGATTCTCCATCCGATGACTCTTTTGAACCAGTGTCTGCAGAATTCCACGGGAAAGAAGCCATCAG
Seq A exon
AATAAGAAATCTTAAAAAGGCATATGGAAAAGGCAAGCACGAAAAAGTAGAAGCTTTGAAAG
Seq C2 exon
GCCTGGTATTGGAGGTATACGAAGGCCAGATCACGGGCATCCTCGGTCACAGCGGAGCTGGGAAAACCACGCTGTTAAATATACTCAGCGGACTGTCGGCCCCAACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.1)
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCAGAATTCCACGGGAA
R:
GCCGACAGTCCGCTGAGTATA
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development