GgaEX6016336 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7955985-7957361:-
Coord C1 exon
chr18:7957205-7957361
Coord A exon
chr18:7956879-7956937
Coord C2 exon
chr18:7955985-7956056
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTACCTTTCCTTTAGACT
3' ss Score
9.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCAAATACGGCGTGCCGTACCCCCCGCTGTTCTTTCTGAGGCCGTCGTATTGGCTGCAGTGGGGCAGCAAGCGCAGCACCCAGCCTGACCCCATCCCTGTCCCTGGCTGTGACACCGAGCCCATGCCTGAGGGCTTCGAGGGGAAGGAGGCCATCAG
Seq A exon
ACTATACAACATTAGAAAAACATACAAGAGGAAGGGCAAGATAACCGAAGCTTTAAGAG
Seq C2 exon
GTTTGTCCTTCAACATTTATGAAGGTCAGATCACTGCATTACTTGGTCTCAGCGGGTCTGGAAAAACTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021391-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(7.7=9.5)
C2:
PF0000522=ABC_tran=FE(88.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCATCCCTGTCCC
R:
AGACCCGCTGAGACCAAGTAA
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]