GgaEX1004164 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7932318-7933562:-
Coord C1 exon
chr18:7933391-7933562
Coord A exon
chr18:7932852-7932910
Coord C2 exon
chr18:7932318-7932428
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTCCTTCCTTTTTAGACT
3' ss Score
11.46
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTAAATACGGCATCCCAGCTCCACCGCTTTTCTGCCTGAAGCCCTCGTATTGGATGCAGAGCAGGAGGGGCTCTCCTGGGGAAGGGCACAGAGGTGCTGGGAGCCCTGAGGAGCCCCCAGGGGACAACGTGGAGCCAGTGCCCCTCGAGTTCAGGGGGAAAGAGGCTATCAG
Seq A exon
ACTCCACAATATTAAAAAAACATACAAAAAGAAAGACAAGAAGACAGAAGCCTTGAGAG
Seq C2 exon
GTTTGTCTTTTACTATTTACGAGGGTCAGATCACTGCCTTGCTCGGTCAAAGTGGGGCTGGAAAGACAACACTGTTAAATGTGCTCAGTGGGCTGACTTCACCTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.5)
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTCAGGGGGAAAGAGG
R:
TCAGAAGGTGAAGTCAGCCCA
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]