MmuEX6090790 @ mm9
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109830376-109833167:-
Coord C1 exon
chr11:109832999-109833167
Coord A exon
chr11:109831132-109831190
Coord C2 exon
chr11:109830376-109830486
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTTTCTCTTTTGCAGAAT
3' ss Score
11.98
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATGAATACGGACATCAGCACTCTCCCCTGTTTTTCCTGAAATCTTCATTTTGGCTACAAACACGAAAGCCTGCTCATGTGATTCTTGAAGATGGAATAGACCCCGTTCCTTCATCAGGTGACTCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAAGAATCCATCAG
Seq A exon
AATCAGAAATATTTCAAAAGAATACAAAGGAAAGCCCAATAAAATAGAAGCCTTAAAAG
Seq C2 exon
ACCTGACGTTGGACATATATGAAGGCCAAATCACAGCAGTACTTGGTCACAGTGGAGCTGGGAAATCAACACTGTTAAATATTCTTAGCGGATTATCTGTTCCTACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-'11-12,'11-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.192 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.5)
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTTCCTTCATCAGGTGAC
R:
ATTTCCCAGCTCCACTGTGAC
Band lengths:
134-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: