RnoEX6050276 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98280404-98283624:-
Coord C1 exon
chr10:98283456-98283624
Coord A exon
chr10:98281262-98281320
Coord C2 exon
chr10:98280404-98280514
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATACCTTTTCTCATTTGCAGAAT
3' ss Score
11.45
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGAGTATGGACACCAGCGGTCTCCCCTGTTTTTCCTGAAACCCTCATTTTGGGTACAACCACGAAAGCCTGCTCACGTGATTCTTGAAGATGGAATAGATCCCGCTCCTTTATCAGGTGGCTCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAAGAATCCATCAG
Seq A exon
AATCAGAAATATTTCAAAAGAATACAAAGGAAAGCCCAGTAAAATAGAAGCCTTGAAAG
Seq C2 exon
ACCTGACACTGGACATATATGAAGGCCAAATCACAGCTTTACTTGGTCACAGTGGAGCTGGGAAGTCAACACTGTTAAATATCCTTAGTGGATTATCTGTCCCTACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.5)
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTTATCAGGTGGCTCG
R:
GTTGACTTCCCAGCTCCACTG
Band lengths:
135-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]