MmuEX6099580 @ mm9
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25421766-25422343:-
Coord C1 exon
chr2:25422232-25422343
Coord A exon
chr2:25421972-25422088
Coord C2 exon
chr2:25421766-25421900
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTACCCCCCCCCCCCCCAGAGC
3' ss Score
10.39
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGGAGTTTGTCAGTCTGGTGGACTTGGATGGCCCTGGCCAGCAGGGGGCTGGGGTGGACAATGTGACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAG
Seq A exon
AGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGCTGGCATACAGGCCACCTCACAGATGCCCACTGGCACCGTATAAAAAGCCACGGCTCTCAGCTTGACCACACAACTGGCCAAG
Seq C2 exon
GCTTTTTCATGTTCTTGGATCCCACGGACCCACCTGCTCGAGGCCAAGGTGCCCTGTTGCTCACAAGACCTCAGGTGCCAGTTGTCCCCAAGGAATGTCTCAGCTTCTGGTACCGCCTGTATGGGCCCCAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941-'26-28,'26-27,27-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.050 C2=0.152
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(17.9=73.7)
A:
PF0062918=MAM=PD(2.3=5.0),PF0062918=MAM=PU(23.2=90.0)
C2:
PF0062918=MAM=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTGTCAGTCTGGTGG
R:
CAATCTGGGGCCCATACAGG
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: