MmuEX6099580 @ mm10
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25566246-25566823:-
Coord C1 exon
chr2:25566712-25566823
Coord A exon
chr2:25566452-25566568
Coord C2 exon
chr2:25566246-25566380
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTACCCCCCCCCCCCCCAGAGC
3' ss Score
10.39
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGGAGTTTGTCAGTCTGGTGGACTTGGATGGCCCTGGCCAGCAGGGGGCTGGGGTGGACAATGTGACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAG
Seq A exon
AGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGCTGGCATACAGGCCACCTCACAGATGCCCACTGGCACCGTATAAAAAGCCACGGCTCTCAGCTTGACCACACAACTGGCCAAG
Seq C2 exon
GCTTTTTCATGTTCTTGGATCCCACGGACCCACCTGCTCGAGGCCAAGGTGCCCTGTTGCTCACAAGACCTCAGGTGCCAGTTGTCCCCAAGGAATGTCTCAGCTTCTGGTACCGCCTGTATGGGCCCCAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941-'30-26,'30-25,31-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.050 C2=0.167
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(17.9=73.7)
A:
PF0062918=MAM=PD(3.4=7.5),PF0062918=MAM=PU(22.6=87.5)
C2:
PF0062918=MAM=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTGTCAGTCTGGTGG
R:
CAATCTGGGGCCCATACAGG
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types