BtaEX6047675 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021550 | MAMDC4
Description
Bos taurus MAM domain containing 4 (MAMDC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001143873]
Coordinates
chr11:106328429-106329494:-
Coord C1 exon
chr11:106329363-106329494
Coord A exon
chr11:106328679-106328795
Coord C2 exon
chr11:106328429-106328563
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCACCTCTGCCCGCCCCCAGAGG
3' ss Score
9.24
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGCACTTCCTGGCTGTGCAGAGGGCCTGGGGGCAGCTGGCCGAGGAGGCCCGGGCGCTCACACCCACCCTTGGCCCCTCGGGCCCCCGCTGCGAGCTCCGCCTGGTTTACTATCTGCAGAGTCACCCCCGAG
Seq A exon
AGGTCTCCTGTAACTTTGAGCGGGGGGCCTGCGGCTGGCACACCGGCCACCTAACAGATGCCCACTGGCACCGGGTCGAGAGCCGTGGCCCGAGGTACGACCACACCACGGGCCAAG
Seq C2 exon
GCCACTTCGTGCTCCTGGACCCCGTGGACCCCCCAGCCCGGGGCCCTGCTGCCCACCTGCTCACCCAGCCCAGGGTGCCCTCAGCCCCTCAGGAGTGCCTCTCCTTCTGGTTCCACCTCTTCGGGCCCCAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021550-'16-16,'16-15,19-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.275 C2=0.348
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(51.2=100)
A:
PF0062918=MAM=PD(1.2=2.5),PF0062918=MAM=PU(23.2=90.0)
C2:
PF0062918=MAM=FE(29.0=100)
Main Skipping Isoform:
ENSBTAT00000032582fB4029
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCCTGGCTGTGCAGAG
R:
AGGTGGAACCAGAAGGAGAGG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]