GgaEX6014705 @ galGal3
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:940105-941540:-
Coord C1 exon
chr17:941433-941540
Coord A exon
chr17:940455-940572
Coord C2 exon
chr17:940105-940239
Length
118 bp
Sequences
Splice sites
3' ss Seq
NNNNNNNTCTCTCTGGGCAGAGC
3' ss Score
0
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GTCGAGCTGCTGGGGATGGCGGAGCTGCAGGACCCCGAGGCCATCGCCATCGCCAACGTGACGTTCGTGCAGTGCAACCCTGGCGTGGAGCCCCCCGAGGCTGCGGGT
Seq A exon
AGCTGTCCTGCAACTTCGAGGCGGGATCTGTGCGGTTGGTACCTGGACCGGGGCAGCGACTTCCAGTGGGTCCGCAGCACAGGACAGGGGCAGGGCTCCGACCACACCACCGGATCGG
Seq C2 exon
GATACTTCTTGGCCGTGGACCCCTCAGCACCATGGAGCCGTGGGCAACATGCACAGCTCATCACCTACAGACAGGAGCCAGCTGCTGCCCCGCAGTGCCTCGCCTTCTGGTACCGCCTGGCTGGCCCGCAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'20-23,'20-22,21-23=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.328 C2=0.035
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(21.5=72.2)
A:
PF0062918=MAM=PU(22.3=87.5)
C2:
PF0062918=MAM=PU(14.3=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCTGCTGGGGATGG
R:
AGCCAGGCGGTACCAGAAG
Band lengths:
229-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]