GgaEX6014705 @ galGal4
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:558502-559273:-
Coord C1 exon
chr17:559168-559273
Coord A exon
chr17:558852-558968
Coord C2 exon
chr17:558502-558636
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGCCACCTCTCTCTGGGCAGAGC
3' ss Score
7.5
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GTCGAGCTGCTGGGGATGGCGGAGCTGCAGGACCCCGAGGCCATCGCCATCGCCAACGTGACGTTCGTGCAGTGCAACCCTGGCGTGGAGCCCCCCGAGGCTGCGG
Seq A exon
AGCTGTCCTGCAACTTCGAGGCGGATCTGTGCGGTTGGTACCCGGACCGGGGCAGCGACTTCCAGTGGGTCCGCAGCACAGGACAGGGGCAGGGCTCCGACCACACCACCGGATCGG
Seq C2 exon
GATACTTCTTGGCCGTGGACCCCTCAGCACCATGGAGCCGTGGGCAACATGCACAGCTCATCACCTACAGACAGGAGCCAGCTGCTGCCCCGCAGTGCCTCGCCTTCTGGTACCGCCTGGCTGGCCCGCAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'22-30,'22-29,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.043
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(16.8=72.2)
A:
PF0062918=MAM=PU(23.2=90.0)
C2:
PF0062918=MAM=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCTGCTGGGGATGG
R:
AGCCAGGCGGTACCAGAAG
Band lengths:
227-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]