MmuEX6099932 @ mm9
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:27847514-27851434:+
Coord C1 exon
chr2:27847514-27847567
Coord A exon
chr2:27851226-27851270
Coord C2 exon
chr2:27851381-27851434
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATCCAATTCTCTGTTTCTAGGGG
3' ss Score
7.93
5' ss Seq
ACGGTAACC
5' ss Score
6.62
Exon sequences
Seq C1 exon
GGTTCCATTGGATTCCCTGGCTTCCCGGGCGCCAACGGAGAGAAGGGTGGCAGG
Seq A exon
GGGACACCTGGAAAGCCAGGACCACGGGGACAGAGAGGCCCAACG
Seq C2 exon
GGCCCGCGGGGTGAACGAGGCCCACGAGGCATCACGGGGAAGCCTGGCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.8=100)
A:
PF0139113=Collagen=FE(17.9=100)
C2:
PF0139113=Collagen=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCATTGGATTCCCTGGC
R:
CTTAGGGCCAGGCTTCCCC
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: