BtaEX6047764 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106899986-106903570:-
Coord C1 exon
chr11:106903517-106903570
Coord A exon
chr11:106900166-106900210
Coord C2 exon
chr11:106899986-106900039
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACACCCTTCTCTGATTGCAGGGC
3' ss Score
8.87
5' ss Seq
ACGGTAACC
5' ss Score
6.62
Exon sequences
Seq C1 exon
GGTTCTATCGGATTTCCTGGATTTCCCGGCGCCAACGGAGAAAAGGGCGGCAGG
Seq A exon
GGCACCCCTGGGAAGCCGGGACCACGGGGGCAGCGAGGCCCGACG
Seq C2 exon
GGCCCACGAGGTGAAAGAGGCCCACGGGGCATCACCGGCAAGCCTGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'39-45,'39-44,40-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.5=77.8),PF0139113=Collagen=FE(24.3=100)
A:
PF0139113=Collagen=FE(20.0=100)
C2:
PF0139113=Collagen=FE(24.3=100),PF0139113=Collagen=PU(6.9=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTATCGGATTTCCTGGAT
R:
CCAGGCTTGCCGGTGATG
Band lengths:
101-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]