GgaEX1016850 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8211947-8215892:+
Coord C1 exon
chr17:8211947-8212000
Coord A exon
chr17:8215430-8215474
Coord C2 exon
chr17:8215839-8215892
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGTTCCTTTTCCTTTGCAGGGG
3' ss Score
12.82
5' ss Seq
ACGGTAACA
5' ss Score
6.72
Exon sequences
Seq C1 exon
GGCTCCATTGGCTTCCCAGGATTTCCAGGCGCCAACGGCGAGAAGGGCACACGG
Seq A exon
GGGACACCTGGCAAACCAGGTCCAAGGGGGCAACGCGGTCCAACG
Seq C2 exon
GGTCCACGAGGGGAAAGAGGCCCTAGGGGAAGCACTGGGAAACCTGGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(16.5=77.8)
A:
PF0139113=Collagen=PD(15.7=86.7),PF0139113=Collagen=FE(16.5=100)
C2:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCATTGGCTTCCCAG
R:
CTTTGGGCCAGGTTTCCC
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]