MmuEX6101002 @ mm10
Exon Skipping
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:39107208-39121209:-
Coord C1 exon
chr2:39121111-39121209
Coord A exon
chr2:39108307-39108403
Coord C2 exon
chr2:39107208-39107306
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTGTCCACTGCAGGCC
3' ss Score
11.18
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTACGAACTTCTGAGACCAGTTATCTGAATGAGGCTTTCTCCTTCTACTCTGCAATCAGACAGAGATCATACTACTCTCAAGTCAATAAAGAGGACAG
Seq A exon
GCCTGAGTTGGTTGTTAAGAAACTCCGATACTACGCAAGATTTATAGTAGTTTGCCTTCTTCTTAACAAAATGGACGTTGTGAAAGACCTGGTAAAG
Seq C2 exon
GAATTGTCTGATGAAATTGAAGATTATACTCATCGCTTTAATACTGAAGATCAAGTCGAGTGGAACCTGGTGCTTCAAGAGGTAGCAGCATTCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236-'12-14,'12-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(6.5=100)
C2:
PF120703=DUF3550=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACCAGTTATCTGAATGAGGC
R:
GCTGCTACCTCTTGAAGCACC
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types