DreEX6011711 @ danRer10
Exon Skipping
Gene
ENSDARG00000060865 | scai
Description
suppressor of cancer cell invasion [Source:ZFIN;Acc:ZDB-GENE-060526-57]
Coordinates
chr5:31430708-31431564:+
Coord C1 exon
chr5:31430708-31430806
Coord A exon
chr5:31430904-31431000
Coord C2 exon
chr5:31431466-31431564
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTCCCATCTTCTTTGCACAGGCC
3' ss Score
8.52
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAG
Seq A exon
GCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTACGCTCGGTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTTAAGGTGTTGGTTAAG
Seq C2 exon
GAACTTTCGGAGGAGATTGAGGACTACACCCAGCGCTTCAACACTGAGGACCAGTTAGAGTGGAATCTGGTGCTGCAGGAAGTAGCAGCTTTTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060865-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(17.6=100)
A:
PF120703=DUF3550=FE(17.1=100)
C2:
PF120703=DUF3550=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCACTTCAGAAACAAGCT
R:
CTGCAGCACCAGATTCCACTC
Band lengths:
175-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]