GgaEX0001104 @ galGal4
Exon Skipping
Gene
ENSGALG00000001037 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr17:9543586-9545616:+
Coord C1 exon
chr17:9543586-9543684
Coord A exon
chr17:9544044-9544140
Coord C2 exon
chr17:9545518-9545616
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGTTGTTGTGCTTAGGCC
3' ss Score
9.84
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTTGCGCACTTCTGAAACCAGCTATCTCAATGAAGCTTTCTCCTTCTATTCCGCGATCAGGCAGAGGTCATACTACTCCCAGGTTAACAAGGAAGACAG
Seq A exon
GCCTGAATTAGTGGTTAAGAAGCTGCGTTACTATGCAAGGTTTATAGTGGTTTGTCTCTTGCTCAACAAAATGGATGTCGTAAAGGACCTTGTAAAG
Seq C2 exon
GAGCTTTCAGATGAGATTGAAGACTACACTCATCGTTTTAATACTGAAGATCAGGTGGAGTGGAACCTGGTTCTTCAGGAAGTGGCAGCTTTTATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.6=100)
A:
PF120703=DUF3550=FE(6.4=100)
C2:
PF120703=DUF3550=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCACTTCTGAAACCAGCTA
R:
GAACCAGGTTCCACTCCACCT
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]