RnoEX0078274 @ rn6
Exon Skipping
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23391859-23398498:-
Coord C1 exon
chr3:23398400-23398498
Coord A exon
chr3:23393157-23393253
Coord C2 exon
chr3:23391859-23391957
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTTTGTCCAATGCAGGCC
3' ss Score
9.38
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTACGAACTTCTGAGACCAGTTATTTGAATGAGGCTTTCTCCTTCTACTCTGCAATCAGACAGAGGTCATACTACTCTCAAGTCAACAAAGAGGACAG
Seq A exon
GCCTGAGTTGGTTGTTAAGAAACTCCGATACTATGCAAGATTTATAGTAGTTTGTCTTCTTCTTAATAAAATGGACGTTGTGAAAGACCTGGTAAAG
Seq C2 exon
GAATTGTCTGATGAAATTGAAGATTATACTCATCGCTTTAATACTGAAGATCAAGTTGAGTGGAACCTGGTGCTCCAAGAGGTAGCAGCATTCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278-'13-12,'13-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(6.5=100)
C2:
PF120703=DUF3550=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACGAACTTCTGAGACCAGTT
R:
GAGCACCAGGTTCCACTCAAC
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]