HsaEX0011616 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127781386-127789189:-
Coord C1 exon
chr9:127789091-127789189
Coord A exon
chr9:127782952-127783048
Coord C2 exon
chr9:127781386-127781484
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTATCTTCCATAGACC
3' ss Score
10.63
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTTACGCACATCGGAAACCAGCTATCTGAATGAGGCTTTTTCCTTCTATTCTGCAATCAGACAGAGATCATATTATTCTCAAGTCAATAAAGAGGACAG
Seq A exon
ACCTGAATTGGTAGTTAAGAAGTTACGATATTATGCAAGATTTATAGTAGTTTGTCTTCTTCTCAACAAAATGGATGTTGTAAAGGATCTGGTAAAG
Seq C2 exon
GAATTGTCAGATGAAATTGAAGATTATACTCACCGATTTAATACTGAAGATCAAGTGGAATGGAACTTGGTGCTTCAAGAAGTAGCAGCTTTCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(10.3=100)
A:
PF120703=DUF3550=FE(10.0=100)
C2:
PF120703=DUF3550=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACATCGGAAACCAGCTAT
R:
AGCACCAAGTTCCATTCCACT
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)