MmuEX6101431 @ mm10
Exon Skipping
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59342093-59347804:+
Coord C1 exon
chr2:59342093-59342243
Coord A exon
chr2:59344798-59344993
Coord C2 exon
chr2:59347720-59347804
Length
196 bp
Sequences
Splice sites
3' ss Seq
TAGTCGTGTGCACCCGGCAGGTA
3' ss Score
3.06
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TTTGCAGCATACATCCGGGCAGCTGTCCGGAAGGAAAAAGGGCTTCCTATCCTTGTCGAGCTTCTAAGGATGGATAATGACAGAGTTGTCTCTTCTGTGGCCACTGCCTTGAGGAACATGGCGCTGGACGTTCGCAACAAGGAGCTCATAG
Seq A exon
GTAAATACGCCATGCGAGACCTGGTGAACAGGCTTCCAGGTGGCAACGGCCCCAGCATCCTGTCCGATGAAACCGTGGCAGCCATCTGCTGTGCTCTGCACGAGGTCACCAGCAAAAACATGGAGAATGCCAAAGCTCTGGCCGACTCGGGAGGTATAGAGAAGCTGGTGAACATAACCAAAGGCAGAGGAGACAG
Seq C2 exon
ATCCTCTCTGAAAGTGGTGAAGGCGGCAGCCCAGGTCTTGAATACATTATGGCAGTACCGGGACCTCCGGAGCATTTACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=74.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGCATACATCCGGGC
R:
GAGGTCCCGGTACTGCCATAA
Band lengths:
218-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types